FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9466022
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG14400.017.9513363
GAGACTT42100.017.8782921
AGGGGTG11400.017.8508244
AACGGCC29150.017.6978749
GAGACCC25300.017.6586531
CCCGGAA17350.017.631831
ACCTGTG20150.017.4689314
TAACGAC21500.017.4529131
GGGGTGA9850.017.4215455
ACGGCCT29650.017.36233110
GCACGTG23300.017.3325391
TTAGCGG12400.017.2981539
CGATGCG16500.017.2730031
ACGGAAG19050.017.2714271
AACGATG22250.017.2540652
CGGTGTG15550.017.1189214
CCCGAAG19050.017.0981371
TGCGGAG13900.017.0143413
ATACCCG26450.017.0095832
AGTTGGC19100.016.9891228
Produced by FastQC (version 0.11.5)