FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11474132
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT715150.073.561911
AGCAGTG798550.065.689262
CAGTGGT1034450.050.5365564
GCAGTGG1065850.049.2095223
AGTGGTA1083650.048.352185
TGGTATC1131500.046.1587527
GTGGTAT1134150.046.106536
GGTATCA1155600.045.255058
GTATCAA1175750.044.480449
ACGACGC4000.027.5349245
CAACGCA1155800.026.10204512-13
ATCAACG1160900.025.99118210-11
ACGCAGA1209250.025.01094414-15
AGAGTAC1196500.024.93644118-19
GCAGAGT1213550.024.7890416-17
TACATGG1181700.024.76262722-23
AGTACAT1198250.024.72697320-21
CATGGGA498600.023.12218324-25
TCAACGC1149350.022.80972712-13
CATGGGG460250.022.55502124-25
Produced by FastQC (version 0.11.5)