FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11580898
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG15700.018.218123
GAGACCC31300.017.9643481
AACGGCC34800.017.9220899
TCAACGG34750.017.9158387
GGGGTGA13250.017.8502755
CGCATGG37400.017.7999441
ACGGCCT34850.017.73871410
GAGACTT51200.017.386551
AGGGGTG14950.017.3657344
TGCGGAG18250.017.360393
GCCGTGA14400.017.269541
GCATGAC35900.017.1887347
AGAGAGT26650.017.1703478
TAACGAC28100.017.1515221
CGGTGTG20150.017.142614
CGATGCG23400.017.069691
CGCTGAG22750.017.0695933
GCACGTG28300.016.9914281
GGCTAGT26750.016.9843374
TTAGCGG14700.016.911269
Produced by FastQC (version 0.11.5)