FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11448958
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT711300.074.1888051
AGCAGTG804700.065.4668662
CAGTGGT1042400.050.395344
GCAGTGG1081050.048.779733
AGTGGTA1092550.048.1754155
TGGTATC1134550.046.3377047
GTGGTAT1139300.046.1697466
GGTATCA1156950.045.4649128
GTATCAA1178250.044.6222089
ATCAACG1158000.026.3017310-11
CAACGCA1156000.026.29999412-13
ACGACGC5350.025.3519485
ACGCAGA1208600.025.21370314-15
AGAGTAC1196350.025.11838718-19
GCAGAGT1216100.024.95367216-17
AGTACAT1197700.024.86949220-21
TACATGG1184950.024.79498722-23
CATGGGG472800.023.26428824-25
CATGGGA475800.022.91211324-25
TCAACGC1149400.022.90956712-13
Produced by FastQC (version 0.11.5)