FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11005877
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT685050.074.161861
AGCAGTG777900.065.16432
CAGTGGT998650.050.762114
GCAGTGG1030550.049.2386443
AGTGGTA1042900.048.6572575
TGGTATC1090350.046.4159937
GTGGTAT1092200.046.3753246
GGTATCA1110100.045.5941438
GTATCAA1131250.044.709219
CAACGCA1107550.026.25651712-13
ATCAACG1114500.026.10985610-11
ACGCAGA1161500.025.1257514-15
AGAGTAC1150100.025.08619518-19
GCAGAGT1162450.025.01844216-17
AGTACAT1149450.024.8711220-21
TACATGG1136800.024.82920522-23
CATGGGA462700.023.20660424-25
ACGACGC4400.023.1081165
TCAACGC1101400.022.98577712-13
CATGGGG448850.022.93774224-25
Produced by FastQC (version 0.11.5)