FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11087136
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGCC33150.018.117289
GGGGTGA10950.017.9831565
CGGGAAG16000.017.9451683
GAGACCC29700.017.8579331
GAGACTT47600.017.8464131
CGATGCG23500.017.6059951
TAACGAC27500.017.5259671
ACGGAAG21450.017.4931351
ACGGCCT34500.017.31269310
CGCATGA26650.017.2968626
TTAGCGG13750.017.279659
TCAACGG34700.017.2129087
CCCGGAA23150.017.2067221
AACGATG26100.017.196762
GCACGTG26550.017.1583841
ATACCCG32300.017.0973242
CGGTGTG21100.017.048744
GTGGTAG22100.017.0239685
AGAGAGT25850.017.0209318
CGCTGAG20350.016.9743143
Produced by FastQC (version 0.11.5)