FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10024543
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT622950.073.183421
AGCAGTG697100.065.274942
CAGTGGT902500.050.2631074
GCAGTGG930200.048.956333
AGTGGTA948650.047.9344985
TGGTATC986400.045.9633337
GTGGTAT989600.045.839256
GGTATCA1009500.045.0702488
GTATCAA1024900.044.3132139
CAACGCA1005300.026.07398812-13
ATCAACG1007250.026.00674410-11
ACGCAGA1054850.024.88617914-15
AGAGTAC1044700.024.84585618-19
TACATGG1030050.024.72725522-23
GCAGAGT1058750.024.72498316-17
AGTACAT1045000.024.63774920-21
CATGGGG402050.022.83279624-25
TCAACGC1000300.022.75705112-13
CATGGGA424700.022.7311224-25
CGCAGAG1022150.022.35319316-17
Produced by FastQC (version 0.11.5)