FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10429011
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACGAC25800.018.6810511
CCCGGAA21850.018.0796471
CGGTGTG16650.017.8419484
CGGGAAG14750.017.8278353
GCCGTGA14050.017.7785551
GAGACCC26950.017.6797471
GAGACTT46450.017.6488931
TGCGGAG16950.017.5910723
TCAACGG34400.017.553057
CCAGCGC18300.017.435716
GCATGAC31000.017.4204127
ACGGCCT33800.017.37703510
AACGATG23100.017.2911072
CCCGAAG21900.017.2846761
ACGGAAG19900.017.2523561
AGAGAGT22800.017.2215428
CGATGCG20150.017.2021371
CGTGAGC24500.017.199884
AACGGCC34150.017.1984449
AGGGGTG12800.017.1914624
Produced by FastQC (version 0.11.5)