FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8654135
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA18250.018.1480851
ACGGAAG17300.018.1271
GAGACCC23800.017.984561
GAGACTT37650.017.9152411
GCCGTGA12050.017.897661
CGGGAAG12350.017.7282413
AGAGAGT18450.017.526598
CGCATGG25950.017.4697651
TCAACGG27200.017.4687297
TAACGAC21000.017.4482611
CGGTGTG15400.017.4320554
TTGGGCG11900.017.3835331
ATACCCG24500.017.289872
AAGGCGA9950.017.2443987
ATGGTTG31300.017.1906261
CCAGCGC14850.017.1886226
CCCGAAG19100.017.167621
CGATGCG17850.017.136961
GCATGAC25700.017.1188017
AAGAGAG24750.017.1092917
Produced by FastQC (version 0.11.5)