FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10024199
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG16700.018.4424923
GAGACTT46000.018.130721
AACGGCC31200.017.980439
ACGGAAG20100.017.9000951
CGCATGG30500.017.7487961
CCCGGAA20050.017.670351
CGGTGTG19850.017.621574
ACGGCCT32100.017.47639310
AGGGGTG13300.017.3678344
GAGACCC27950.017.360431
CGTAAGT30250.017.349891
AACGATG21100.017.307562
TTGGGCG14450.017.2846951
TCAACGG32600.017.241927
TAACGAC23500.017.1831151
CGCTGAG20450.017.0507683
CGTGAGC23400.017.016524
GCCGTGA14100.017.0114381
AGAGAGT23200.016.9737348
TACCGGG20250.016.952481
Produced by FastQC (version 0.11.5)