FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9092206
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA16050.018.4401151
ACGGCCT28550.018.10820610
GAGACTT40550.017.9890821
GCCGTGA12900.017.9108411
GGGGTGA10700.017.5787835
TCAACGG29700.017.5179637
TAACGAC22600.017.4772221
ACGGAAG17100.017.372171
AACGGCC30050.017.3506269
GAGACCC24750.017.3370721
AGAGAGT20500.017.3311588
CGGTGTG16700.017.3227064
TAGCGGA11250.017.30630910
GGCTAGT19750.017.265184
AAGGCGA10150.017.230987
CGCTGAG15900.017.1565953
TTGGGCG13100.017.0494791
AGGGGTG13100.016.9611994
GCACGTG22100.016.926731
GCATGAC27750.016.9255897
Produced by FastQC (version 0.11.5)