FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9112963
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA19050.018.195231
ACGGCCT26950.018.16173410
GAGACTT39000.017.944631
GCATGAC26550.017.896117
AACGGCC28000.017.6764039
CGGGAAG13000.017.5189063
GAGACCC26150.017.505061
AACGATG20950.017.4889622
ACGGAAG18150.017.3999211
CGCTGAG15500.017.319613
TTGGGCG13800.017.303051
CGCATGG28750.017.299861
GAAGAGG13250.017.2711124
GGCTAGT20850.017.096684
CGATGCG17900.017.0896741
GCACGTG21200.017.0766241
AGCCACG20200.017.0504151
TCAACGG29150.017.0167797
GTGGTAG16750.017.0120945
GCGGTCG9000.016.9920254
Produced by FastQC (version 0.11.5)