FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9662613
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCC28000.017.877361
GCACGTG24050.017.840191
GAGACTT42050.017.7383691
AACGATG19800.017.7227272
ACGGAAG18500.017.7212581
GCCGTGA13950.017.5076871
CGGGAAG14050.017.459573
TAACGAC22950.017.400991
CGATGCG18850.017.3922161
CCCGGAA19550.017.3884831
CGCATGG29250.017.3766521
CGCTGAG18050.017.3079723
GCGCATG20800.017.2935835
GCATGAC28850.017.2713367
TCAACGG30150.017.2562897
AACGGCC29850.017.245749
AGAGAGT21650.017.1727228
ACGGCCT29900.017.14332610
CCAGCGC19500.016.9233846
GGCTAGT21050.016.8793414
Produced by FastQC (version 0.11.5)