FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9860736
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCATG21500.018.1619785
CGGGAAG14800.017.9113623
CCCGGAA22350.017.8678741
CCCGAAG20300.017.8296831
ACGGAAG18600.017.8031671
GAGACCC28350.017.7728121
GGGGTGA11050.017.7186665
AGAGAGT22700.017.589798
AGGGGTG13700.017.5831574
GAGACTT43450.017.4957281
TTAGCGG12400.017.475389
TCAACGG30800.017.4635057
CGGTGTG16950.017.4564484
CGATGCG19150.017.4067461
AACGGCC30650.017.4057739
TAACGAC23400.017.3952081
GCATGAC32500.017.3284557
ACGGCCT30600.017.29042810
CGCATGG31000.017.2471891
ATACCCG27550.017.0484982
Produced by FastQC (version 0.11.5)