FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9804480
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT618300.074.2443541
AGCAGTG700400.065.4265062
CAGTGGT908500.050.3608784
GCAGTGG934300.049.041053
AGTGGTA954450.048.0409745
TGGTATC996100.045.9832427
GTGGTAT997350.045.885946
GGTATCA1018900.045.011138
GTATCAA1034450.044.3848469
CAACGCA1015800.026.0186112-13
ATCAACG1019000.025.96307410-11
ACGCAGA1063300.024.91120514-15
AGAGTAC1049850.024.85480118-19
TACATGG1034150.024.67582322-23
GCAGAGT1067650.024.67500916-17
AGTACAT1049850.024.58857220-21
CATGGGA418300.022.91541324-25
TCAACGC1011300.022.75090812-13
CATGGGG410100.022.6998724-25
CGCAGAG1034200.022.27253216-17
Produced by FastQC (version 0.11.5)