FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9526502
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGCGA10450.018.4204397
CGGGAAG13150.018.0677433
GAGACCC24900.017.8041131
CCCGAAG21150.017.7361221
GCGCATG20450.017.696235
CCCGGAA17800.017.675051
AACGGCC30500.017.6720969
TCAACGG30800.017.642277
TAACGAC22450.017.6400891
ACGGAAG18550.017.5534481
ACGGCCT30650.017.5497210
ACTATGG37100.017.4348451
CGCATGG30650.017.4070781
GAGACTT43100.017.381391
CAAGGCG9850.017.309348
ATGGTTG36150.017.1322651
GCATGAC28700.017.055187
GTGGTAG18450.016.99135
AGAGAGT20500.016.95588
AACGATG21450.016.922512
Produced by FastQC (version 0.11.5)