FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8653297
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA18100.018.6006621
CGGGAAG12150.018.3784943
ACGGCCT25650.018.13993310
GCACGTG20350.018.1119791
ACTATGG34400.017.6229531
CGCATGG25850.017.5782261
AACGGCC26750.017.5584729
GAGACCC24050.017.5214181
CGATGCG17150.017.4497951
AAGGCGA10600.017.433567
TTGGGCG12800.017.3630871
GAGACTT37900.017.3599111
GCGCATG17950.017.342525
CGGTGTG15300.017.3266984
TCAACGG27650.017.3052067
CGTAAGT28550.017.3031731
AGAGAGT17950.017.280948
GCATGAC27350.017.1732797
ACGGAAG15150.017.0663571
TAACGAC21300.017.0458971
Produced by FastQC (version 0.11.5)