FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8593024
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG12300.018.5115743
ACGGCCT25650.018.26860410
GAGACTT36700.018.1659431
ACGGAAG17950.018.0804371
CGTAAGT28850.017.9989661
GAGACCC23100.017.8595541
CGATGCG16950.017.849021
GCACGTG19400.017.806531
AGAGAGT18800.017.7867418
TAACGAC22300.017.661581
TTGGGCG12550.017.6199111
AAGGCGA10150.017.4477927
CGGTGTG15300.017.3981084
CCCGAAG18650.017.3428271
CCCGGAA17450.017.2745421
AACGGCC27150.017.2591889
AGGGCGT7650.017.2543223
TTAGCGG12050.017.2526349
AACGATG20550.017.1820052
ATACCCG24150.017.1713662
Produced by FastQC (version 0.11.5)