FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9577574
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA18850.018.3306621
ACGGAAG18550.017.855931
GAGACTT41200.017.7349821
GCACGTG24850.017.6687741
CGCATGG28450.017.5990411
GGGGTGA9900.017.5550735
GAGACCC26500.017.4406761
AACGATG23000.017.4083982
GCGCATG20700.017.3763335
GCATGAC30900.017.3716897
CGGGAAG14000.017.3638083
TCAACGG29350.017.3146867
TACCGGG20650.017.2124371
GCCGTGA13200.017.1732771
AAGGCGA10900.017.155497
TAACGAC25650.017.11771
GGGTCTG18800.017.0916841
CGCTGAG19000.017.0784783
CGGTGTG18550.017.0776964
CGATGCG17750.017.0488171
Produced by FastQC (version 0.11.5)