FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9193193
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA19300.018.0728631
ACGGAAG17100.018.0171831
CGGGAAG13950.017.9793763
ACGGCCT29800.017.93891510
GAGACTT43050.017.9171891
AGAGAGT20300.017.7185388
CGCATGG28650.017.5899981
GCACGTG21300.017.5640351
GAGACCC24650.017.5428681
TAACGAC22050.017.515541
AACGGCC30700.017.4846769
GCATGAC27400.017.462847
CGGTGTG18100.017.260424
GTGGAGA16350.017.2284891
CCCGAAG20350.017.1944271
TCAACGG30850.017.185737
AACGATG21150.017.1642422
CGATGCG19450.017.1414681
GCGCATG21900.017.028145
CCAGCGC18050.016.9425666
Produced by FastQC (version 0.11.5)