FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9279994
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG13600.019.2509353
TTGGGCG12900.018.2565231
CCCGGAA18450.018.0734181
GAGACTT40900.017.9471911
AACGGCC29600.017.8741329
TCAACGG29650.017.8068927
CGCTGAG17550.017.738753
CCCGAAG20800.017.7245581
ACGGCCT30000.017.5624810
CGTAAGT29350.017.5481661
AAGGCGA11250.017.5013737
GCATGAC27500.017.4391547
GAGACCC26500.017.4005171
CGGTGTG18350.017.3850384
GCGCATG20750.017.2827665
ACGGAAG17850.017.2629011
GCACGTG20500.017.1786921
AACGATG20850.017.1471142
ATACCCG25050.017.0826642
GAGGGGT13150.017.0654663
Produced by FastQC (version 0.11.5)