FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9265907
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA18750.018.6633871
TTGGGCG14750.018.353031
AACGGCC28800.018.1419099
GAGACTT41000.017.9290491
GGGGTGA9150.017.7919045
GCGCATG22650.017.774395
ACGGCCT29350.017.76446210
CGGTGTG16400.017.7068734
TCAACGG29750.017.6735087
GCATGAC30050.017.6434867
GAGACCC27400.017.5909041
TAACGAC22950.017.5014821
CGCTGAG17600.017.4996573
CGGGAAG13850.017.393163
AAGGCGA9550.017.2770547
ACGGAAG18350.017.1512051
TACCGGG20350.017.1419221
CCCGAAG18600.017.0981661
AACGACG12450.017.0519662
AGGGCGT9500.017.020723
Produced by FastQC (version 0.11.5)