FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8397476
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGACCC24000.018.2957251
CCCGGAA15500.017.9629151
AAGGCGA9650.017.7819067
GAGACTT36750.017.7576451
AACGATG19650.017.7454952
GCATGAC27400.017.7039057
CGGTGTG15150.017.5705914
GCACGTG23100.017.5316931
ACGGCCT24550.017.51887910
AGGGGTG12000.017.5079674
ACGGAAG15700.017.3836121
CGATGCG16650.017.383191
TAACGAC20450.017.3280851
GGGTCTG17600.017.195231
CGCATGG25100.017.0993211
AATCGTG32200.017.0884281
GCGCATG21500.017.0879145
AGAGAGT17650.017.0760298
TTGACCC21950.016.996251
CGGGAAG12250.016.9710773
Produced by FastQC (version 0.11.5)