FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9885372
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGCC32600.018.0507749
CCCGGAA20150.018.0233631
TCAACGG32450.017.9304757
GAGACTT44600.017.8402271
ACGGAAG18350.017.7522161
AGAGAGT21650.017.7306638
ACGGCCT33050.017.70515810
AGCCACG23100.017.5796951
TAACGAC23300.017.5704941
GCGCATG21200.017.4894715
GCACGTG25600.017.453521
GCATGAC31000.017.4209027
CGGGAAG14400.017.4201873
GGCTAGT20150.017.363314
CCCGAAG20950.017.3351211
CGCATGG29400.017.331281
ATACCCG26750.017.2333032
AAGGCGA11600.017.162147
CCAGCGC17850.016.9498626
CGATGCG19200.016.9089951
Produced by FastQC (version 0.11.5)