FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8114863
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGAAG11200.018.56263
AACGGCC25850.017.9573219
GAGACTT38250.017.922731
GCGCATG17450.017.8397465
AGGGGTG9900.017.7778724
TTGGGCG13100.017.7238771
ACGGCCT26400.017.66654410
TAACGAC20450.017.6493241
TCAACGG26150.017.6250067
AGAGAGT17850.017.6246368
GAGACCC23900.017.5418191
ATACCCG21450.017.5388772
ACGGAAG16700.017.5272081
CGGTGTG15450.017.5146564
AACGATG19250.017.4289862
GGGGTGA8750.017.348775
GTGGTAG16150.017.3005085
CGCATGG25700.017.2551781
CGATGCG15150.017.2140581
CCCGAAG17600.017.193631
Produced by FastQC (version 0.11.5)