FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9452175
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA19500.017.8888911
GAGACTT41600.017.7495751
GCATGAC28850.017.6890077
CGATGCG18550.017.6779171
CCCGAAG19400.017.6407661
ACGGCCT28850.017.49987210
CGGGAAG13400.017.4888023
GAGACCC23400.017.3527891
AACGATG23000.017.3167322
TTGGGCG15700.017.3123511
GCCGTGA13550.017.2169151
CGCTGAG17900.017.2103713
TCAACGG29400.017.0962227
AACGGCC29550.017.0847829
CGCATGG29050.017.0839841
GGCTAGT18950.017.069514
TAACGAC23750.017.050731
AGGGGTG11700.017.0206324
ATGGTTG36550.016.9503941
AGAGAGT20850.016.9334858
Produced by FastQC (version 0.11.5)