FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9460374
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGGAA20150.018.07571
GTGGTAG18600.017.8003355
GCGCATG21400.017.5787095
CGGGAAG12600.017.5467973
CGATGCG20550.017.5096781
AACGGCC29500.017.3386299
GCACGTG23300.017.3321481
TAACGAC23400.017.2580781
ACGGAAG16900.017.2544611
GAGACTT42400.017.2323471
CCAGCGC18200.017.2245586
TTGGGCG13550.017.2162571
CGCATGG28400.017.2031061
ACGGCCT29750.017.19292610
TCAACGG29600.017.1682057
GAGACCC26500.017.1077751
CGCTGAG17050.017.031463
TATGGCG12100.016.99965310
GGGTCTG19700.016.9804651
GGGGTGA9600.016.9576285
Produced by FastQC (version 0.11.5)