FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9442476
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGTG12300.018.2441794
AAGGCGA10350.017.9608657
GAGACTT39800.017.8337041
ACGGAAG20000.017.8270681
AACGGCC29050.017.7585539
GCACGTG23550.017.756511
TAGCGGA12900.017.73595210
CCCGAAG21300.017.6689761
GAGACCC26300.017.6153491
GGGGTGA11250.017.6002675
TTGGGCG13350.017.5575241
ATACCCG25650.017.5400432
GCGCATG19850.017.4007665
TAACGAC24000.017.3777221
AGGGCGT6900.017.3768923
AGAGAGT19850.017.3447078
TCAACGG29650.017.3249937
GTGGTAG19650.017.2979725
TTAGCGG13250.017.2674549
ACGGCCT29800.017.23778510
Produced by FastQC (version 0.11.5)