FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8563288
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGCCT27100.018.06271610
GAGACTT39100.017.956281
CCCGGAA17600.017.7573471
GGGGTGA10050.017.7309155
ACGGAAG17300.017.6836191
AACGATG17950.017.5877292
GTGGTAG16200.017.5859955
AACGGCC28300.017.4911529
TAACGAC18750.017.4899021
GCGCATG20750.017.334525
ATGGTTG32650.017.3241671
GAGACCC22400.017.292871
GCACGTG21000.017.2404671
CGGGAAG11550.017.2376793
TTGACCC22750.017.2203121
TCAACGG28450.017.1275837
TACCGGG17950.017.0432641
ATACCCG24700.017.0121332
AGGGGTG11450.017.0039564
TTAGCGG12000.016.9583199
Produced by FastQC (version 0.11.5)