FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9934215
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT34050.020.0282369
CTCGGAG34300.019.850197
TTGTGAG54400.019.5931366
TCGGAGA36100.018.9213688
GAGTAAT50700.018.91806410
CGTGTGC36700.018.852275
CTTGTGA57900.018.6937165
TCGTCGA30900.018.4751476
GCCGATG39550.018.4155451
GGCATCC38450.018.3947416
GGGTAAG32450.018.3385933
CCGCTAG32750.018.23713910
GACTCTC54050.018.116211
CGCGATG17200.018.03386510
GCTCGAC24200.017.9994376
GCGATCC34300.017.958624
ACCGCTA33250.017.9298139
GGCAGCT27350.017.8970646
AGGTCGC27600.017.8943676
TCTCGGA45500.017.889556
Produced by FastQC (version 0.11.5)