FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9813688
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG32650.020.010967
TTGTGAG52250.019.8092486
CGGAGAT33600.019.4124369
CGTGTGC36500.018.9549395
TCGGAGA34800.018.7746498
CTTGTGA54700.018.6605875
CTATCGG33150.018.4484672
GAGTAAT49800.018.42049610
CGGGCAC26850.018.2706994
GACGTTA39650.018.205581
AGGTCGC28700.018.20446
CCGCTAG31850.018.19976610
CCGGGTA29150.018.1950131
GACTCTC52550.018.175691
AGCGATC35100.018.1754633
GCTCGAC27700.018.1468436
GCGATCC34250.018.11274
ATCGGTA29350.018.0635684
CGACCAG21200.018.0035534
GAATGCT43400.017.9690692
Produced by FastQC (version 0.11.5)