FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9636009
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG34800.020.197087
CGGAGAT34700.020.128499
TTGTGAG49800.019.5692236
TCGGAGA36350.019.2148198
CGTGTGC32350.019.04075
GACTCTC52750.018.7948281
GGTGCCG16350.018.7022557
GAGTAAT48450.018.6160310
CTTGTGA53500.018.5036745
TGCGTCT27250.018.2875292
GGGTAAG31700.018.2521383
GCTCGAC25950.018.183996
TCTCGGA44950.018.1569736
CGGGCAC28250.018.1052174
GCGATCC33000.018.0990224
GGCATCC37150.018.0609366
GACGTTA39000.017.9443841
GCCGATG37850.017.9081551
CCGCTAG31900.017.89549310
CTCGAGG25000.017.7818681
Produced by FastQC (version 0.11.5)