FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9617040
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG32200.019.983457
TTGTGAG51250.019.5521726
CGGAGAT32850.019.487599
CGTGTGC30800.019.0347425
TCGGAGA34050.018.8331078
CTTGTGA52100.018.7898275
GAGTAAT47400.018.6340710
GGCATCC38200.018.5435566
CCGCTAG32050.018.46395510
GCTCGAC26500.018.4292476
GACTCTC51000.018.3395481
CTATCGG30550.018.1823792
ACCGCTA32750.018.1364789
GCGATCC33650.018.1090324
CTCGAGG23350.018.0489431
ATCGGTA27750.017.9954784
GGGTAAG32450.017.9312883
AGCGATC34900.017.9016653
TGCGTCT27800.017.8839782
CACCGCT34350.017.804048
Produced by FastQC (version 0.11.5)