FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11072716
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG37900.020.0831477
CGGAGAT38550.019.744529
TTGTGAG62150.019.5562696
TCGGAGA39650.019.141278
GGTGCCG16750.018.8465547
CTTGTGA62650.018.8032675
CGTGTGC40800.018.6826275
GACTCTC58650.018.6488461
GAGTAAT59000.018.56830210
TCGTCGA37250.018.4551936
CGGTGGA21200.018.3148656
AGGTCGC32600.018.1184736
TTGCGTC40450.018.0083141
GCTCGAC28350.018.0023756
CTCGAGG29850.017.9890841
GCGATCC40600.017.9889954
GGGTAAG36400.017.9192643
CTATCGG35550.017.9146252
GGCATCC45450.017.8844436
AAGGGCC24850.017.8380532
Produced by FastQC (version 0.11.5)