FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8230018
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG28700.020.4644477
CGGAGAT29650.019.5863049
TTGTGAG46150.019.3107476
TCGGAGA30250.019.3068948
GGGTAAG29800.018.903383
GCTCGAC21250.018.8981696
GAGTAAT41500.018.84363710
CGTGTGC28250.018.811115
CGGGCAC22900.018.6895964
CTTGTGA46350.018.681465
GGCATCC32450.018.6480666
CCGGGTA25850.018.6455781
CCGCTAG27250.018.44560810
GACTCTC45550.018.4331051
GCGATCC27300.018.296964
CTGGACG14000.018.2356931
TCGTCGA24600.018.2030896
AGGTCGC25750.018.201966
GCCGATG33300.018.1752661
CGATCCA28250.018.0711295
Produced by FastQC (version 0.11.5)