FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8155332
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT27150.020.055099
CTCGGAG27300.019.7833657
TTGTGAG43650.019.781726
TCGGAGA27850.019.5506558
GCTCGAC22450.018.9125296
CTTGTGA45200.018.7625525
GGCATCC30400.018.670456
GACTCTC44500.018.6216721
GGTGCCG13350.018.6212357
CCGGGTA23000.018.516841
GAGTAAT41600.018.456710
CTGGACG12750.018.3845581
CCGCTAG26750.018.38127710
CTATCGG25450.018.3254262
CGTGTGC29550.018.2767935
GACAATC32250.018.247363
CACCGCT28050.018.1563858
TCGTCGA25450.018.1526556
CGGTGGA15000.018.1127476
GGAGTGC17500.018.0393055
Produced by FastQC (version 0.11.5)