FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9522757
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAGAT33000.020.3312239
CTCGGAG34150.020.0007487
TTGTGAG50900.019.5188586
TCGGAGA34400.019.4717128
CGTGTGC30800.018.9681935
GCTCGAC25000.018.835986
CTTGTGA54100.018.608275
GGGTAAG31050.018.5674323
GAGTAAT49650.018.47542410
GACTCTC52150.018.4424721
CCGGGTA27400.018.3137071
GGCATCC39450.018.2953746
TCTCGGA43150.018.2564646
TGCGTCT28800.018.2233642
CTATCGG30600.018.194152
CGGTGGA17400.018.1475126
GACAATC37350.018.116183
CCGCTAG33350.018.04010610
CTCGAGG24250.018.015271
GCCGATG36850.017.917431
Produced by FastQC (version 0.11.5)