FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10863750
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG38700.019.9528587
CGGAGAT38600.019.776859
TTGTGAG55900.019.4412466
GACTCTC59050.019.0280691
GCTCGAC29300.018.9959876
TCGGAGA40150.018.9857038
GAGTAAT53100.018.54024510
AGCGATC41350.018.4878433
CGTGTGC38300.018.3805375
GGTGCCG17200.018.354077
CTTGTGA58500.018.2762625
GCGATCC41450.018.1513334
CTCGAGG28150.018.1396331
GGGTAAG37850.018.1050263
TGCGTCT30450.018.0617452
CCGGGTA32150.018.0392531
CGGTGGA21100.018.0373446
CGGGCAC31950.017.9367544
TCGTCGA34350.017.9324766
AGGTCGC32100.017.8872856
Produced by FastQC (version 0.11.5)