FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10978356
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG39150.019.8919947
CGGAGAT39750.019.3982149
TTGTGAG60250.019.2972226
CGTGTGC38500.019.0278785
TCGGAGA40400.019.0042578
CTTGTGA61350.018.574715
GAGTAAT57100.018.51262910
GACTCTC59600.018.5039061
CTCGAGG28950.018.4008881
GGGTAAG35950.018.3888443
GGTGCCG15900.018.3326647
CGGTGGA19900.018.2958166
CCGCTAG37700.018.29392810
GCCGATG42950.018.2712541
GCTCGAC29500.018.158666
GGCATCC42750.018.113966
CTATCGG34200.018.1076932
CGGGCAC33050.018.105244
TAACAAG39900.018.057159
CCGGGTA32700.018.0072751
Produced by FastQC (version 0.11.5)