FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8921143
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG31650.019.9465857
CGGAGAT32200.019.4353189
GCTCGAC22200.019.3794576
TTGTGAG48400.019.3010166
CGGTGGA16550.018.948066
TCGGAGA33300.018.8593678
TCGTCGA26300.018.7848826
GAGTAAT44200.018.68757410
CGTGTGC30100.018.6066915
CTTGTGA49900.018.5444225
GGGTAAG30100.018.4239143
GACTCTC50450.018.3870071
GGCATCC36800.018.3585516
GGTGCCG15700.018.3540557
GCGATCC31300.018.1745684
CCGGGTA27150.018.1573641
ATCGGTA27150.018.1562444
CTGGACG14450.018.0478381
CCGGGCA20300.017.941133
AGCCGGA12650.017.9106758
Produced by FastQC (version 0.11.5)