FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8908534
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG30950.020.1869627
CGGAGAT31600.019.7023269
TTGTGAG48250.019.2182376
TCGGAGA32400.019.1816838
CGTGTGC32600.018.9625645
GCGATCC30000.018.7727174
CTTGTGA49050.018.7251745
GGTGCCG14300.018.614987
CGATCCA31050.018.527575
GAGTAAT44950.018.52493910
GACTCTC49250.018.4976711
GGCATCC33850.018.3925116
CCGCTAG29300.018.3207310
GCTCGAC24250.018.2346556
AGCGATC32000.018.1838783
GGAGTGC17250.018.1733155
CCAAGAC26650.018.1607535
TCGTCGA27800.018.082346
CGGTGGA16200.018.0613376
GAATGCT40500.018.0341762
Produced by FastQC (version 0.11.5)