FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9034690
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG31850.020.132857
CGGAGAT32800.019.4151739
TTGTGAG48050.019.2810526
TCGGAGA33750.018.8691928
CTTGTGA49350.018.7731425
GGTGCCG12750.018.7195637
CGTGTGC33600.018.698595
GGGTAAG29350.018.6320343
GGCATCC37550.018.6069776
GCTCGAC24200.018.5050856
GAGTAAT44900.018.4207810
GCCGATG38850.018.298321
GACGTTA38000.018.2153191
GACTCTC49450.018.159071
CCGCTAG33050.018.13683910
TCTCGGA41850.018.062316
AGCGATC30750.017.9626583
GCGATCC30250.017.93224
CGGGCAC24800.017.924284
TCGTCGA29600.017.8799116
Produced by FastQC (version 0.11.5)