FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8737946
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG31050.020.1196257
CGGAGAT30900.020.0037299
TTGTGAG45900.019.4654926
TCGGAGA31650.019.4602098
CGTGTGC32600.019.0025945
GACTCTC47800.018.8082581
GCTCGAC24450.018.7663276
CTGGACG14450.018.7336181
GGTGCCG14500.018.5836587
GGGTAAG28350.018.4746383
CCGGGTA25900.018.396811
GGCATCC35050.018.3649586
CCGCTAG30200.018.28226310
ACCGCTA30300.018.2582239
AGCGATC30250.018.1872353
CTTGTGA48550.018.176375
GAGTAAT44400.018.10787810
CACCGCT31500.018.0165798
TGCGTCT23100.018.0054652
GAATGCT44000.017.8304142
Produced by FastQC (version 0.11.5)