FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10201916
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG34650.020.2516547
TTGTGAG56500.019.5513746
CGTGTGC34750.019.4404185
CGGAGAT36050.019.2821249
TCGGAGA36550.019.0185348
CTTGTGA57400.018.95735
GCTCGAC27250.018.855696
GACGAGC15200.018.813649
GAGTAAT52950.018.71551910
CCGCTAG36050.018.6109110
GACTCTC56600.018.528441
GGTGCCG17050.018.3849957
CGGTGGA18300.018.337536
TCGTCGA31200.018.3375286
CCGGGTA30100.018.2064461
GGCATCC38450.018.1706096
GGGTAAG34300.018.123683
GCCGATG40000.018.102071
CACCGCT37450.018.0915688
GCGATCC34500.018.08244
Produced by FastQC (version 0.11.5)