FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10147217
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG34850.019.7264187
CGGAGAT34600.019.719
TTGTGAG54400.019.634376
CGTGTGC35550.018.936795
TCGGAGA36450.018.7096278
GGGTAAG31950.018.5917193
GAGTAAT52200.018.52206210
GACTCTC54800.018.4556181
CTTGTGA56250.018.4409665
CCGGGTA27600.018.4215641
CCGCTAG34400.018.3857110
GCTCGAC27300.018.2529146
TCGTCGA31600.018.2058646
GCGTGTG32500.018.1754634
GGCATCC38750.018.167916
CGGTGGA18650.018.1663886
CGACCAG22150.018.1264884
GAATGCT51450.018.0664272
AGCGATC32850.018.0488723
ACCGCTA35150.018.0247049
Produced by FastQC (version 0.11.5)