FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11624055
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG39250.020.1497977
TTGTGAG62400.019.6373986
CGGAGAT40300.019.2974369
GCTCGAC30400.019.2134046
CTTGTGA64150.018.8100345
CGTGTGC41650.018.4604285
TCGGAGA42250.018.4586948
AGGTCGC34400.018.3222796
GCGATCC37500.018.303454
GGGTAAG37400.018.2349013
GAGTAAT60800.018.21843710
AGCGATC38550.018.147473
GTTGAAC40150.018.1144981
GGAGTGC24550.018.1012885
GACTCTC59800.018.0868421
CGGTGGA20200.018.078826
GGTGCCG19000.018.0626937
CCGCTAG39300.018.05312510
CACCGCT40800.017.982388
CCGGGTA33250.017.9356881
Produced by FastQC (version 0.11.5)