FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11809283
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG38900.020.187657
TTGTGAG64950.019.7187886
CGGAGAT39950.019.574479
TCGGAGA40650.019.2375568
CTTGTGA68650.018.8162885
GAGTAAT61950.018.67719510
CGTGTGC41400.018.6570595
CGGTGGA20700.018.550756
GCTCGAC30900.018.4805666
CCGCTAG41850.018.44925510
GGTGCCG18850.018.204577
AGGTCGC34650.018.195246
GGCATCC48800.018.1502426
AGCGATC42600.018.1315083
GCGATCC42150.018.0640414
TCGTCGA34050.018.031156
CCGGGTA36200.018.027721
GGTGGCG11350.018.0241287
GACTCTC62950.017.971821
GCCGATG45700.017.964591
Produced by FastQC (version 0.11.5)