FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13878782
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG50150.019.9813127
CGGAGAT50250.019.656989
TTGTGAG76300.019.3787086
TCGGAGA51250.019.3163558
GGAGTGC27150.019.003535
CGTGTGC52150.018.8799155
CTTGTGA78500.018.778745
GCTCGAC35900.018.7239236
GGCATCC54800.018.590056
CCGCTAG45900.018.57249510
CGGGCAC40050.018.5684434
GAGTAAT73500.018.42264410
GGTGCCG23050.018.420147
GACTCTC77500.018.3720571
CTCGAGG32500.018.2486441
AGCGATC48950.018.0691533
GCGTGTG47450.018.0142464
GCGATCC48250.017.9891644
AGGTCGC40550.017.9875816
TTGCGTC47000.017.9799541
Produced by FastQC (version 0.11.5)