FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9582438
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTGAG52050.020.0805746
CGGAGAT30450.019.613679
CTCGGAG30800.019.6050517
CTTGTGA53300.019.1968085
CGTGTGC34450.018.7465845
GAGTAAT50350.018.63395110
TCGGAGA32200.018.5477098
GGGTAAG29400.018.4865173
GCTCGAC25300.018.4816886
GACTCTC47100.018.3863321
CGGGCAC27800.018.3235424
TGCGTCT25150.018.155982
CGGTGGA18000.018.1533666
CTCGAGG22700.018.1295491
GGAGTGC17500.018.1062155
GGCATCC37650.018.0883486
CCGCTAG31850.018.0267110
CGATCCA32250.017.9444145
AAGGGCC21900.017.936332
CACCGCT32700.017.8941148
Produced by FastQC (version 0.11.5)