FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005200619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005200619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9385413
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGAG32650.020.111387
CGGAGAT33650.019.4483439
TTGTGAG53100.019.2067536
CTTGTGA53350.019.1786165
CGTGTGC33800.019.0743475
GAGTAAT49100.018.8173210
TCGGAGA35150.018.6809838
GCGATCC29150.018.6447734
GGGTAAG32300.018.563723
AGGTCGC27500.018.563256
GACTCTC53050.018.5218091
CTCGAGG24800.018.3238071
GCTCGAC23900.018.2751676
CCGCTAG30300.018.2230510
GGCATCC35500.018.2229086
CGGTGGA17900.018.0702026
CGGGCAC26200.018.0146054
CACCGCT31500.017.982398
CCGGGTA29200.017.9743371
TAACAAG37700.017.9717399
Produced by FastQC (version 0.11.5)